Publications - HD Marshall
Lait LA, HD Marshall, SM Carr. 2018. Phylogeographic mitogenomics of Atlantic cod Gadus morhua: Variation in and among trans-Atlantic, trans-Laurentian, Northern cod, and landlocked fjord populations. Ecology and Evolution Jun 1;8(13):6420-6437. doi: 10.1002/ece3.3873. eCollection 2018 Jul.
Langille BL, R Perry, D Keefe, O Barker, HD Marshall. 2016. Mitochondrial population structure and post-glacial dispersal of longnose suckers in Labrador, Canada: evidence for multiple refugial origins and limited ongoing gene flow. Journal of Fish Biology 89:1378-1392. https://doi.org/10.1111/jfb.13042
Clark JBJ, D Whalen, HD Marshall. 2016. Examination of hereditary hyperplastic gingivitis in association with superior fur quality in farmed silver foxes using canine microarrays and candidate gene sequencing. Genetics and Molecular Research 15(2). http://dx.doi.org/10.4238/gmr.15025363
Marshall HD, BL Langille, CA Hann, HG Whitney. 2016. Patterns of MHC-DRB1 polymorphism in a post-glacial island canid, the Newfoundland red fox (Vulpes vulpes deletrix), suggest balancing selection at species and population timescales. Immmunogenetics 68(5):381-9. doi: 10.1007/s00251-016-0907-0
Clark JBJ, RC Hudson, HD Marshall. 2015. Index case report of hereditary hyperplastic gingivitis in North American farmed Silver Fox, Vulpes vulpes. Canadian Veterinary Journal 56:408–411.
Carr SM, HD Marshall, T Wareham, D Craig. 2015. The Big ORF Theory: algorithmic, computational, and approximation approaches to open reading frames in short- and medium-length dsDNA sequences. In: Emerging Trends in Computational Biology, Bioinformatics, and Systems Biology (Publisher: Elsevier/MK).
Clark, JBJ, M Booman, RC Hudson, HD Marshall. 2014. Genome-wide expression analysis of hereditary hyperplastic gingivitis in silver foxes (Vulpes vulpes) using canine microarrays. Genome 57: 449–457.
Clark JBJ, SJ Tully, HD Marshall. 2014. Sequence analysis of the Ras-MAPK pathway genes SOS1, EGFR and GRB2 in Silver Foxes (Vulpes vulpes): candidate genes for hereditary hyperplastic gingivitis. Genetica 142: 517-523.
Langille BL, KE O'Leary, HG Whitney, HD Marshall. 2014. Mitochondrial DNA diversity and phylogeography of insular Newfoundland red foxes (Vulpes vulpes deletrix). Journal of Mammalogy 95: 772-780.
Langille BL, RC Perry, DG Keefe, HD Marshall. 2014. Novel mitochondrial DNA primers for identification of population trends in longnose suckers (Catostomus catostomus) and multispecies identification. Conservation Genetic Resources 6: 279-281.
Hicks BJ, BL Pilgrim, HD Marshall. 2014. Origin and genetic composition of the European fire ant, Myrmica rubra (Hymenoptera: Formicidae) in Newfoundland, Canada. Canadian Entomologist 146: 457-464.
Wyatt J, S Kenny, T Mills, HD Marshall, HM Murray. 2014. Condition index and neutral red assay response of cultured Mytilus edulis L. in a wet holding facility during winter and spring in northeastern Newfoundland. Fisheries and Aquaculture Journal 5:1 doi: 10.4172/2150-3508.1000091
Rodrigues B, ES Yaskowiak, BJ Hearn, HD Marshall. 2013. Origin and diversity of the introduced southern red-backed vole (Myodes gapperi) population in Newfoundland, Canada based on mitochondrial haplotypes: ecological and management implications of a potentially invasive species. Canadian Wildlife Biology and Management 2: 1-10.
Brockerville RM, MJ McGrath, BL Pilgrim, HD Marshall. 2013. Sequence analysis of three pigmentation genes in the Newfoundland population of Canis latrans links the Golden Retriever Mc1r variant to white coat color in coyotes. Mammalian Genome 24: 134-141.
Marshall HD, AJ Baker, AR Grant. 2013. Complete mitochondrial genomes from four subspecies of common chaffinch (Fringilla coelebs): new inferences about mitochondrial rate heterogeneity, neutral theory, and phylogenetic relationships within the order Passeriformes. Gene 517:37-45.
Wyatt J, S Kenny, KD Hobbs, T Mills, HD Marshall, HM Murray. 2013. The effect of extended holding time on the condition, physiology and stress response of cultured blue mussels (Mytilus edulis L.1758) during summer and fall in northeastern Newfoundland. Aquaculture 372-375: 111-118.
Pilgrim BL, RC Perry, DG Keefe, EA Perry, HD Marshall. 2012. Microsatellite variation and genetic structure of brook trout (Salvelinus fontinalis) populations in Labrador and neighbouring Atlantic Canada: evidence for limited ongoing gene flow and dual routes of post-Wisconsinan colonization. Ecology and Evolution 2: 885-898.
Pilgrim BL, RC Perry, JL Barron, HD Marshall. 2012. Unusual pattern of nucleotide variation in the mitochondrial genome of brook trout (Salvelinus fontinalis) in eastern Canada: evidence for genetic recombination and dual routes of post-glacial recolonization. Genetics and Molecular Research 11: 3466-3481.
Marshall HD, ES Yaskowiak, C Dyke, EA Perry. 2011. Microsatellite population structure and colonization history of Newfoundland black bears (Ursus americanus hamiltoni). Canadian Journal of Zoology 89: 831-839.
Pope AM, KN Smith, SM Carr, HD Marshall. 2011. Mitogenomic and microsatellite variation in descendents of the European founding population of the island of Newfoundland: high diversity in an isolated population. Genome 54:110-119.
Marshall HD, KA Hart, ES Yaskowiak, GB Stenson, D McKinnon, EA Perry. 2010. Molecular identification of prey in the stomach contents of harp seals (Pagophilus groenlandicus) using species-specific oligonucleotides. Molecular Ecology Resources10: 181-189.
Marshall HD, MW Coulson, SM Carr. 2009. Near neutrality, linkage, and rate heterogeneity govern mitochondrial genome evolution in Atlantic cod (Gadus morhua) and other gadine fish. Molecular Biology and Evolution 26: 579-589.
Carr SM, HD Marshall. 2008. Phylogeographic analysis of complete mtDNA genomes of walleye pollock (Gadus chalcogrammus Pallas, 1811) shows an ancient origin of genetic biodiversity. Mitochondrial DNA 19: 490-496.
Carr SM, HD Marshall. 2008. Intraspecific phylogeographic genomics from multiple complete mtDNA genomes in Atlantic cod (Gadus morhua): origins of the "codmother", trans-Atlantic vicariance and mid-glacial population expansion. Genetics 180: 381-9.
Moore SJ, DJ Buckley, A MacMillan, HD Marshall, L Steele, PN Ray, Z Nawaz, B Baskin, M Frecker, SM Carr, E Ives, PS Parfrey. 2008. The clinical and genetic epidemiology of neuronal ceroid lipofuscinosis in Newfoundland. Clinical Genetics 74: 213-22.
Carr SM, HD Marshall, AT Duggan, S Flynn, KA Johnstone, AM Pope, S Royston, CD Wilkerson. 2008. The ArkChip - a multi-species mtDNA genome iterative-sequencing strategy for biodiversity and conservation genomics. Comparative Biochemistry and Physiology D 3: 1-11.
Marshall HD, K A Johnstone, SM Carr. 2007. Application of species-specific oligonucleotides in multiplex PCR for forensic discrimination of two species of scallops, Placopecten magellanicus and Chlamys islandica. Forensic Science International 167:1-7.
Johnstone KA, HD Marshall, SM Carr. 2007. Biodiversity genomics for Species At Risk: patterns of DNA sequence variation within and among complete mitochondrial DNA genomes of three species of wolffish (Anarhichas spp.). Canadian Journal of Zoology 85:151-158.
Coulson MW, HD Marshall, P Pepin, SM Carr. 2006. Mitochondrial genomics of gadine fishes: Implications for taxonomy and biogeographic origins from whole-genome data sets. Genome 49:1115-1130.
Marshall HD, K Ritland. 2002. Genetic diversity and differentiation of Kermode bear populations. Molecular Ecology 11:685-697.
Marshall HD, CN Newton, K Ritland. 2002. Chloroplast phylogeography and evolution of highly polymorphic microsatellites in lodgepole pine (Pinus contorta). Theoretical and Applied Genetics 104:367-78.
Carr SM, HD Marshall, KA Johnstone, LM Pynn, GB Stenson. 2002. How to tell a sea monster: molecular discrimination of large marine animals of the North Atlantic. Biological Bulletin 202:1-5.
Ritland K, CN Newton, HD Marshall. 2001. Genetic basis of the Kermode bear polymorphism. Current Biology 11:1468-1472.
Marshall HD, CN Newton, K Ritland. 2001. Sequence-repeat polymorphisms exhibit the signature of recombination in lodgepole pine chloroplast DNA. Molecular Biology and Evolution 18:2136-8.
Marshall HD, AJ Baker. 1999. Colonization history of Atlantic island common chaffinches (Fringilla coelebs) revealed by mitochondrial DNA. Molecular Phylogenetics and Evolution 11:201-212.
Baker AJ, HD Marshall. 1999. Population divergence in chaffinches (Fringilla coelebs) assessed with control region sequences. In: Adams, N. J. & Slotow, R. H. (Eds.), Proceedings of the 22 International Ornithological Congress, Durban: 1899-1913, Birdlife South Africa, Johannesburg.
Marshall HD, AJ Baker. 1998. Rates and patterns of mitochondrial DNA sequence evolution in fringilline finches (Fringilla spp.) and the greenfinch (Carduelis chloris). Molecular Biology and Evolution 15:638-46.
Cohen BL, AJ Baker, K Blechschmidt et al. (15 co-authors). 1997. Enigmatic phylogeny of skuas (Aves: Stercorariidae). Proceedings of the Royal Society of London, Series B. 264:181-90.
Marshall HD, AJ Baker. 1997. Structural conservation and variation the mitochondrial control region of fringilline finches (Fringilla spp.) and the greenfinch (Carduelis chloris). Molecular Biology and Evolution 14:173-184.
Baker AJ, HD Marshall. 1997. Mitochondrial control region sequences as tools for understanding evolution. Pp. 49-80 in D. P. Mindell (Ed.), Avian Molecular Evolution and Systematics, Academic Press, New York.
Carr SM, HD Marshall. 1991. Detection of intraspecific DNA sequence variation in the mitochondrial cytochrome b gene of Atlantic cod (Gadus morhua) by the polymerase chain reaction. Canadian Journal of Fisheries and Aquatic Sciences 48:48-52.
Carr SM, HD Marshall. 1991. A direct approach to the measurement of genetic variation in fish populations: application of the polymerase chain reaction to studies of Atlantic cod (Gadus morhua). Journal of Fish Biology 39 (Supplement A):101-108.
Lobel PB, HD Marshall. 1988. A unique low molecular weight zinc-binding ligand in the kidney cytosol of the mussel, Mytilus edulis, and its relationship to the inherent variability of zinc accumulation in this organism. Marine Biology 99:101-105.