Dideoxy nucleoside triphosphates (ddNTPs)
lack an -OH on the 3'-C as well as the 2'-C of the deoxyribose sugar. The 5'-C can form a phosphodiester
bond with the previous nucleotide in the chain, as
usual. However, the 3'-C
cannot form a bond with next incoming dNTP.
Addition of a ddNTP during DNA replication
therefore stops synthesis of the polynucleotide chain.