But how do you get the fragment back out of the gel???
Old Methods
Gel slab squeeze (French press)
Chop, soak and spin
Filter spin
All give poor yields as often agarose retains the DNA
Electrophoresis onto dialysis membrane
Elution into a dialysis bag under current followed
by precipitation.
Low yield
Low melting point agarose
This agarose can be dissolved at a temperature that
does not denature the DNA
Modern Methods
Dissolving the agarose with a high concentration of NaI (~50 C) and
recovery
1) binding to glassmilk and centrifugation
Shearing of fragments larger than 3-4 kb is
major problem
2) binding to DNA isolation spin column.
Little shearing
email me at bestave@mun.ca